Bioconductor Model design

Showing : model design • reset

1

vote

8

replies

1.9k

views

deseq2 rnaseq model design

6.3 years ago swillis4 ▴ 10

0

votes

1

reply

3.6k

views

deseq2 model design differential gene expression experimental design

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by L_K • 0

5

votes

30

replies

5.9k

views

deseq2 multiple time points time course casecontrol model design

updated 9 days ago by wuwenhui2 • 0 • written 7.8 years ago by heikki.sarin ▴ 10

3 results • Page 1 of 1

Recent ...

Replies

Answer: fast apply on RleList by story.benjamin ▴ 20

solved with viewApply (code is simplified below) test.split <- split(test.gr,seqnames(test.gr)) final.stats <- mclapply(uniqu…

Comment: fast apply on RleList by story.benjamin ▴ 20

Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…

Answer: fast apply on RleList by James W. MacDonald 68k

There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…

Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k

It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…

Comment: how to use `arrayWeightsQuick()`? by matthew • 0

In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.

Votes

Answer: BiocParallel_1.40.1.tar.gz not available

Comment: BiocParallel_1.40.1.tar.gz not available

Awards • All